{% macro fasta_check_report(validation_results, file_name) -%} {% set results_for_fasta = validation_results['fasta_check'][file_name] %} {% if results_for_fasta.get('connection_error') %}
Warning: The following results may be incomplete due to problems with external services. Please try again later for complete results.
Error message: {{ results_for_fasta.get('connection_error') }}
{% endif %} {% set expand_icon = "" %} {% if results_for_fasta.get('all_insdc') %} {% set icon = "✔" %} {% set row_class = "report-section pass" %} {% set text = "All sequences are INSDC accessioned" %} {% else %} {% set expand_icon = "▶" %} {% set icon = "❌" %} {% set row_class = "report-section fail collapsible" %} {% set text = "Some sequences are not INSDC accessioned" %} {% endif %}
{{ expand_icon }} {{ icon }} {{ text }}
{% if not results_for_fasta.get('all_insdc') %}
First 10 sequences not in INSDC. Full report: {{ results_for_fasta.get('report_path', '') }}
{% set sequence_info_list = results_for_fasta.get('sequences', [])|rejectattr("insdc")|list %} {% for sequence_info in sequence_info_list[:10] %} {% endfor %}
Sequence nameRefget md5
{{sequence_info.get('sequence_name') }} {{ sequence_info.get('sequence_md5') }}
{% endif %} {% if 'possible_assemblies' in results_for_fasta %} {% if 'metadata_assembly_compatible' in results_for_fasta %} {% set analysis_text = results_for_fasta.get('associated_analyses')|join(", ") %} {% set expand_icon = "" %} {% if results_for_fasta.get('metadata_assembly_compatible') %} {% set icon = "✔" %} {% set row_class = "report-section pass" %} {% set text = analysis_text + ": Assembly accession in metadata is compatible" %} {% else %} {% set expand_icon = "▶" %} {% set icon = "❌" %} {% set row_class = "report-section fail collapsible" %} {% set text = analysis_text + ": Assembly accession in metadata is not compatible" %} {% endif %} {% else %} {% set expand_icon = "▶" %} {% set icon = "❌" %} {% set row_class = "report-section fail collapsible" %} {% set text = "No assembly accession found in metadata" %} {% endif %}
{{ expand_icon }} {{ icon }} {{ text }}
{% if 'metadata_assembly_compatible' not in results_for_fasta or not results_for_fasta['metadata_assembly_compatible'] %}
Full report: {{ results_for_fasta.get('report_path', '') }}
CategoryAccessions
Assembly accession found in metadata {{ results_for_fasta.get('assembly_in_metadata', 'Not found') }}
Assembly accession(s) compatible with FASTA {{ results_for_fasta.get('possible_assemblies')|join(", ") }}
{% endif %} {% endif %} {%- endmacro %}