PyBamView
Bam file: {{ BAM_FILES|join(',' ) }}
Reference: {{ REF_FILE }}
Region: {{ REGION }}
Samples: {% for sample in SAMPLES %}
{{ sample }}
{% endfor %}
{% for s in SAMPLES %}
{% endfor %}
{% if TARGET_LIST|length > 0 %}
{% for f in BAM_FILES %}
{% endfor %} {% for s in SAMPLES %}
{% endfor %} Select target:
{% for target in TARGET_LIST %} {% if REGION == target.region %}
{{ target.name }}
{% else %}
{{ target.name }}
{% endif %} {% endfor %}
{% endif %}
{% for f in BAM_FILES %}
{% endfor %} {% for s in SAMPLES %}
{% endfor %} Enter region:
Selected:
{% for i in range(REFERENCE|length) %} {% if (REFERENCE[i]) == "N" or (REFERENCE[i]) == "n" %}
{{ REFERENCE[i] }}
{% else %}
{{ REFERENCE[i] }}
{% endif %} {% endfor %}
{% for sample in SAMPLES %}
{{ sample }} (show/hide)
?
{% for aln in ALIGNMENTS[sample] %}
{% for i in range(aln|length) %} {% if (aln[i]|upper) != (REFERENCE[i]|upper) and (REFERENCE[i]|upper|isnuc) and (aln[i]|upper|isnuc) %}
{% else %}
{% endif %}
{{ aln[i] }}
{% endfor %}
{% endfor %}
{% endfor %}