CHANGELOG.md
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
docs/examples/README.rst
docs/examples/nBTu3oi.gif
docs/images/augmentation.gif
docs/images/composed.png
docs/images/data_structures.png
docs/images/fpg_progressive.gif
docs/images/histogram_standardization.png
docs/images/queue.gif
docs/images/random_anisotropy.png
docs/images/random_bias_field.gif
docs/images/random_elastic_deformation.gif
docs/images/random_ghosting.gif
docs/images/random_motion.gif
docs/images/random_noise.gif
docs/images/random_spike.gif
docs/images/random_swap.jpg
docs/images/shape-tutorial.png
docs/images/weiss.jpg
docs/images/z_normalization.png
docs/images/gifs_readme/10_RandomGhosting_mri.gif
docs/images/gifs_readme/1_Lambda_mri.png
docs/images/gifs_readme/2_RandomBlur_mri.gif
docs/images/gifs_readme/3_RandomFlip_mri.gif
docs/images/gifs_readme/4_Compose_mri.gif
docs/images/gifs_readme/5_RandomAffine_mri.gif
docs/images/gifs_readme/6_RandomElasticDeformation_mri.gif
docs/images/gifs_readme/7_RandomBiasField_mri.gif
docs/images/gifs_readme/8_RandomMotion_mri.gif
docs/images/gifs_readme/9_RandomSpike_mri.gif
docs/source/README.rst
docs/source/conf.py
docs/source/credits.rst
docs/source/datasets.rst
docs/source/index.rst
docs/source/quickstart.rst
docs/source/data/dataset.rst
docs/source/data/image.rst
docs/source/data/index.rst
docs/source/data/subject.rst
docs/source/favicon_io/android-chrome-192x192.png
docs/source/favicon_io/android-chrome-512x512.png
docs/source/favicon_io/apple-touch-icon.png
docs/source/favicon_io/favicon-16x16.png
docs/source/favicon_io/favicon-32x32.png
docs/source/favicon_io/for_readme_2000x462.png
docs/source/favicon_io/for_weiss_2000x1062.png
docs/source/favicon_io/torchio_logo_2048x2048.png
docs/source/interfaces/cli.rst
docs/source/interfaces/index.rst
docs/source/interfaces/slicer.rst
docs/source/patches/index.rst
docs/source/patches/patch_inference.rst
docs/source/patches/patch_training.rst
docs/source/transforms/augmentation.rst
docs/source/transforms/others.rst
docs/source/transforms/preprocessing.rst
docs/source/transforms/transforms.rst
src/torchio/__init__.py
src/torchio/constants.py
src/torchio/download.py
src/torchio/py.typed
src/torchio/reference.py
src/torchio/typing.py
src/torchio/utils.py
src/torchio/visualization.py
src/torchio.egg-info/PKG-INFO
src/torchio.egg-info/SOURCES.txt
src/torchio.egg-info/dependency_links.txt
src/torchio.egg-info/entry_points.txt
src/torchio.egg-info/not-zip-safe
src/torchio.egg-info/requires.txt
src/torchio.egg-info/top_level.txt
src/torchio/cli/__init__.py
src/torchio/cli/apply_transform.py
src/torchio/cli/print_info.py
src/torchio/data/__init__.py
src/torchio/data/dataset.py
src/torchio/data/image.py
src/torchio/data/io.py
src/torchio/data/loader.py
src/torchio/data/queue.py
src/torchio/data/subject.py
src/torchio/data/inference/__init__.py
src/torchio/data/inference/aggregator.py
src/torchio/data/sampler/__init__.py
src/torchio/data/sampler/grid.py
src/torchio/data/sampler/label.py
src/torchio/data/sampler/sampler.py
src/torchio/data/sampler/uniform.py
src/torchio/data/sampler/weighted.py
src/torchio/datasets/__init__.py
src/torchio/datasets/bite.py
src/torchio/datasets/episurg.py
src/torchio/datasets/fpg.py
src/torchio/datasets/ixi.py
src/torchio/datasets/medmnist.py
src/torchio/datasets/rsna_miccai.py
src/torchio/datasets/rsna_spine_fracture.py
src/torchio/datasets/slicer.py
src/torchio/datasets/itk_snap/__init__.py
src/torchio/datasets/itk_snap/itk_snap.py
src/torchio/datasets/mni/__init__.py
src/torchio/datasets/mni/colin.py
src/torchio/datasets/mni/icbm.py
src/torchio/datasets/mni/mni.py
src/torchio/datasets/mni/pediatric.py
src/torchio/datasets/mni/sheep.py
src/torchio/external/__init__.py
src/torchio/external/due.py
src/torchio/transforms/__init__.py
src/torchio/transforms/data_parser.py
src/torchio/transforms/fourier.py
src/torchio/transforms/intensity_transform.py
src/torchio/transforms/interpolation.py
src/torchio/transforms/lambda_transform.py
src/torchio/transforms/spatial_transform.py
src/torchio/transforms/transform.py
src/torchio/transforms/augmentation/__init__.py
src/torchio/transforms/augmentation/composition.py
src/torchio/transforms/augmentation/random_transform.py
src/torchio/transforms/augmentation/intensity/__init__.py
src/torchio/transforms/augmentation/intensity/random_bias_field.py
src/torchio/transforms/augmentation/intensity/random_blur.py
src/torchio/transforms/augmentation/intensity/random_gamma.py
src/torchio/transforms/augmentation/intensity/random_ghosting.py
src/torchio/transforms/augmentation/intensity/random_labels_to_image.py
src/torchio/transforms/augmentation/intensity/random_motion.py
src/torchio/transforms/augmentation/intensity/random_noise.py
src/torchio/transforms/augmentation/intensity/random_spike.py
src/torchio/transforms/augmentation/intensity/random_swap.py
src/torchio/transforms/augmentation/spatial/__init__.py
src/torchio/transforms/augmentation/spatial/random_affine.py
src/torchio/transforms/augmentation/spatial/random_anisotropy.py
src/torchio/transforms/augmentation/spatial/random_elastic_deformation.py
src/torchio/transforms/augmentation/spatial/random_flip.py
src/torchio/transforms/preprocessing/__init__.py
src/torchio/transforms/preprocessing/intensity/__init__.py
src/torchio/transforms/preprocessing/intensity/clamp.py
src/torchio/transforms/preprocessing/intensity/histogram_standardization.py
src/torchio/transforms/preprocessing/intensity/mask.py
src/torchio/transforms/preprocessing/intensity/normalization_transform.py
src/torchio/transforms/preprocessing/intensity/rescale.py
src/torchio/transforms/preprocessing/intensity/z_normalization.py
src/torchio/transforms/preprocessing/label/__init__.py
src/torchio/transforms/preprocessing/label/contour.py
src/torchio/transforms/preprocessing/label/keep_largest_component.py
src/torchio/transforms/preprocessing/label/label_transform.py
src/torchio/transforms/preprocessing/label/one_hot.py
src/torchio/transforms/preprocessing/label/remap_labels.py
src/torchio/transforms/preprocessing/label/remove_labels.py
src/torchio/transforms/preprocessing/label/sequential_labels.py
src/torchio/transforms/preprocessing/spatial/__init__.py
src/torchio/transforms/preprocessing/spatial/bounds_transform.py
src/torchio/transforms/preprocessing/spatial/copy_affine.py
src/torchio/transforms/preprocessing/spatial/crop.py
src/torchio/transforms/preprocessing/spatial/crop_or_pad.py
src/torchio/transforms/preprocessing/spatial/ensure_shape_multiple.py
src/torchio/transforms/preprocessing/spatial/pad.py
src/torchio/transforms/preprocessing/spatial/resample.py
src/torchio/transforms/preprocessing/spatial/resize.py
src/torchio/transforms/preprocessing/spatial/to_canonical.py
tests/test_cli.py
tests/test_utils.py