LICENSE.txt
MANIFEST.in
README.txt
run_tests.py
setup.py
docs/1.png
docs/2.png
docs/3.png
docs/4.png
docs/5.png
docs/6.png
docs/Fig 5.png
docs/Fig 6.png
docs/examples.docx
docs/examples.odt
docs/examples.pdf
docs/examples.txt
docs/image.odp
docs/pYPK_figure.docx
docs/pYPK_figure.odt
docs/pYPK_figure.pdf
docs/ypkpathway_manual_0_0_9.docx
docs/ypkpathway_manual_0_0_9.odt
docs/ypkpathway_manual_0_0_9.pdf
tests/four_gene_xylose_pathway1.txt
tests/four_gene_xylose_pathway2.txt
tests/four_gene_xylose_pathway3.txt
tests/manually_assembled_four_gene_xylose_pathway.txt
tests/pth4.txt
tests/pth5.txt
tests/three_gene_xylose_pathway.txt
tests/two_gene_pathway.txt
tests/two_gene_pathway5.txt
tests/ypk_assembly/2524bp_PCR_prod.txt
tests/ypk_assembly/2924bp_PCR_prod.txt
tests/ypk_assembly/3009bp_PCR_prod.txt
tests/ypk_assembly/3567bp_PCR_prod.txt
tests/ypk_assembly/FBA1.txt
tests/ypk_assembly/FBA1_template.txt
tests/ypk_assembly/PDC1.txt
tests/ypk_assembly/PDC1_template.txt
tests/ypk_assembly/PGI.txt
tests/ypk_assembly/PGI_template.txt
tests/ypk_assembly/ScTAL1.txt
tests/ypk_assembly/ScTAL1_template.txt
tests/ypk_assembly/ScXKS1.txt
tests/ypk_assembly/ScXKS1_template.txt
tests/ypk_assembly/SsXYL1.txt
tests/ypk_assembly/SsXYL1_template.txt
tests/ypk_assembly/SsXYL2.txt
tests/ypk_assembly/SsXYL2_template.txt
tests/ypk_assembly/TDH3.txt
tests/ypk_assembly/TDH3_template.txt
tests/ypk_assembly/TEF1.txt
tests/ypk_assembly/TEF1_template.txt
tests/ypk_assembly/footer.py
tests/ypk_assembly/header.py
tests/ypk_assembly/pCAPs.py
tests/ypk_assembly/pCAPs.txt
tests/ypk_assembly/pSU0.py
tests/ypk_assembly/pSU0.txt
tests/ypk_assembly/pSU0_EcoRV.py
tests/ypk_assembly/pSU0_EcoRV.txt
tests/ypk_assembly/pYPK0.py
tests/ypk_assembly/pYPK0.txt
tests/ypk_assembly/pYPK0_FBA1tp_ScTAL1_PDC1tp.py
tests/ypk_assembly/pYPK0_FBA1tp_ScTAL1_PDC1tp.txt
tests/ypk_assembly/pYPK0_FBA1tp_ScTAL1_PDC1tp_plan.html
tests/ypk_assembly/pYPK0_FBA1tp_ScTAL1_PDC1tp_plan.rst
tests/ypk_assembly/pYPK0_PGItp_ScXKS1_FBA1tp.py
tests/ypk_assembly/pYPK0_PGItp_ScXKS1_FBA1tp.txt
tests/ypk_assembly/pYPK0_PGItp_ScXKS1_FBA1tp_plan.html
tests/ypk_assembly/pYPK0_PGItp_ScXKS1_FBA1tp_plan.rst
tests/ypk_assembly/pYPK0_TDH3tp_SsXYL2_PGItp.py
tests/ypk_assembly/pYPK0_TDH3tp_SsXYL2_PGItp.txt
tests/ypk_assembly/pYPK0_TDH3tp_SsXYL2_PGItp_plan.html
tests/ypk_assembly/pYPK0_TDH3tp_SsXYL2_PGItp_plan.rst
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp.py
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp.txt
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp_SsXYL2_PGItp_ScXKS1_FBA1tp_ScTAL1_PDC1tp_pw.py
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp_SsXYL2_PGItp_ScXKS1_FBA1tp_ScTAL1_PDC1tp_pw.txt
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tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp_SsXYL2_PGItp_ScXKS1_FBA1tp_ScTAL1_PDC1tp_pw_plan.rst
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp_plan.html
tests/ypk_assembly/pYPK0_TEF1tp_SsXYL1_TDH3tp_plan.rst
tests/ypk_assembly/pYPKa.py
tests/ypk_assembly/pYPKa.txt
tests/ypk_assembly/pYPKa_A_ScTAL1.py
tests/ypk_assembly/pYPKa_A_ScTAL1.txt
tests/ypk_assembly/pYPKa_A_ScTAL1_pcr_prd.txt
tests/ypk_assembly/pYPKa_A_ScTAL1_plan.html
tests/ypk_assembly/pYPKa_A_ScTAL1_plan.rst
tests/ypk_assembly/pYPKa_A_ScXKS1.py
tests/ypk_assembly/pYPKa_A_ScXKS1.txt
tests/ypk_assembly/pYPKa_A_ScXKS1_pcr_prd.txt
tests/ypk_assembly/pYPKa_A_ScXKS1_plan.html
tests/ypk_assembly/pYPKa_A_ScXKS1_plan.rst
tests/ypk_assembly/pYPKa_A_SsXYL1.py
tests/ypk_assembly/pYPKa_A_SsXYL1.txt
tests/ypk_assembly/pYPKa_A_SsXYL1_pcr_prd.txt
tests/ypk_assembly/pYPKa_A_SsXYL1_plan.html
tests/ypk_assembly/pYPKa_A_SsXYL1_plan.rst
tests/ypk_assembly/pYPKa_A_SsXYL2.py
tests/ypk_assembly/pYPKa_A_SsXYL2.txt
tests/ypk_assembly/pYPKa_A_SsXYL2_pcr_prd.txt
tests/ypk_assembly/pYPKa_A_SsXYL2_plan.html
tests/ypk_assembly/pYPKa_A_SsXYL2_plan.rst
tests/ypk_assembly/pYPKa_E_FBA1tp.py
tests/ypk_assembly/pYPKa_E_FBA1tp.txt
tests/ypk_assembly/pYPKa_E_FBA1tp_pcr_prd.txt
tests/ypk_assembly/pYPKa_E_FBA1tp_plan.html
tests/ypk_assembly/pYPKa_E_FBA1tp_plan.rst
tests/ypk_assembly/pYPKa_E_PDC1tp.py
tests/ypk_assembly/pYPKa_E_PDC1tp.txt
tests/ypk_assembly/pYPKa_E_PDC1tp_pcr_prd.txt
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tests/ypk_assembly/pYPKa_E_PDC1tp_plan.rst
tests/ypk_assembly/pYPKa_E_PGItp.py
tests/ypk_assembly/pYPKa_E_PGItp.txt
tests/ypk_assembly/pYPKa_E_PGItp_pcr_prd.txt
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tests/ypk_assembly/pYPKa_E_PGItp_plan.rst
tests/ypk_assembly/pYPKa_E_TDH3tp.py
tests/ypk_assembly/pYPKa_E_TDH3tp.txt
tests/ypk_assembly/pYPKa_E_TDH3tp_pcr_prd.txt
tests/ypk_assembly/pYPKa_E_TDH3tp_plan.html
tests/ypk_assembly/pYPKa_E_TDH3tp_plan.rst
tests/ypk_assembly/pYPKa_Z_FBA1tp.py
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tests/ypk_assembly/pYPKa_Z_PGItp.py
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tests/ypk_assembly/pYPKa_Z_PGItp_pcr_prd.txt
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tests/ypk_assembly/pYPKa_Z_TDH3tp.py
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tests/ypk_assembly/pYPKa_Z_TDH3tp_pcr_prd.txt
tests/ypk_assembly/pYPKa_Z_TDH3tp_plan.html
tests/ypk_assembly/pYPKa_Z_TDH3tp_plan.rst
tests/ypk_assembly/pYPKa_Z_TEF1tp.py
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tests/ypk_assembly/pYPKpw.py
tests/ypk_assembly/pYPKpw.txt
tests/ypk_assembly/pYPKpw_lin.txt
tests/ypk_assembly/primer_list.txt
tests/ypk_assembly/report.html
tests/ypk_assembly/report.rst
tests/ypk_assembly/voidspace.css
ypkpathway/__init__.py
ypkpathway/ypkpathway.py
ypkpathway.egg-info/PKG-INFO
ypkpathway.egg-info/SOURCES.txt
ypkpathway.egg-info/dependency_links.txt
ypkpathway.egg-info/entry_points.txt
ypkpathway.egg-info/not-zip-safe
ypkpathway.egg-info/requires.txt
ypkpathway.egg-info/top_level.txt
ypkpathway/data/footer.py
ypkpathway/data/header.py
ypkpathway/data/pCAPs.py
ypkpathway/data/pCAPs.txt
ypkpathway/data/pSU0.py
ypkpathway/data/pSU0.txt
ypkpathway/data/pSU0_EcoRV.py
ypkpathway/data/pSU0_EcoRV.txt
ypkpathway/data/pYPK0.py
ypkpathway/data/pYPK0.txt
ypkpathway/data/pYPKa.py
ypkpathway/data/pYPKa.txt
ypkpathway/data/pYPKpw.py
ypkpathway/data/pYPKpw.txt
ypkpathway/data/pYPKpw_lin.txt
ypkpathway/data/template_pYPK0_plan.txt
ypkpathway/data/template_pYPK0_pw.txt
ypkpathway/data/template_pYPK0_pw_plan.txt
ypkpathway/data/template_pYPK0_tp_gene_tp.txt
ypkpathway/data/template_pYPKa_X_insert.txt
ypkpathway/data/template_pYPKa_plan.txt
ypkpathway/data/template_primer_list.txt
ypkpathway/data/template_report.txt
ypkpathway/data/voidspace.css