Metadata-Version: 1.2
Name: moclo
Version: 0.3.0
Summary: A Python implementation of the MoClo system logic.
Home-page: https://github.com/althonos/moclo/
Author: Martin Larralde
Author-email: martin.larralde@ens-paris-saclay.fr
License: MIT
Project-URL: Bug Reports, https://github.com/althonos/moclo/issues
Project-URL: Documentation, https://moclo.readthedocs.io/en/latest/
Project-URL: Addgene Guide, https://www.addgene.org/cloning/moclo/
Description: ``moclo``
        =========
        
        *A Python implementation of the* `MoClo <https://www.addgene.org/cloning/moclo/>`__ *system logic.*
        
        |Source| |PyPI| |Travis| |Docs| |Codecov| |Codacy| |Format| |License|
        
        .. |Codacy| image:: https://img.shields.io/codacy/grade/5b29a9c0d91f4e82944a46997bd9a480/master.svg?style=flat-square&maxAge=300
           :target: https://www.codacy.com/app/althonos/moclo
        
        .. |Codecov| image:: https://img.shields.io/codecov/c/github/althonos/moclo/master.svg?style=flat-square&maxAge=600
           :target: https://codecov.io/gh/althonos/moclo
        
        .. |PyPI| image:: https://img.shields.io/pypi/v/moclo.svg?style=flat-square&maxAge=300
           :target: https://pypi.python.org/pypi/moclo
        
        .. |Travis| image:: https://img.shields.io/travis/althonos/moclo.svg?style=flat-square&maxAge=3600
           :target: https://travis-ci.org/althonos/moclo/branches
        
        .. |Format| image:: https://img.shields.io/pypi/format/moclo.svg?style=flat-square&maxAge=300
           :target: https://pypi.python.org/pypi/moclo
        
        .. |Versions| image:: https://img.shields.io/pypi/pyversions/moclo.svg?style=flat-square&maxAge=300
           :target: https://travis-ci.org/althonos/moclo/
        
        .. |License| image:: https://img.shields.io/pypi/l/moclo.svg?style=flat-square&maxAge=300
           :target: https://choosealicense.com/licenses/mit/
        
        .. |Source| image:: https://img.shields.io/badge/source-GitHub-303030.svg?maxAge=3600&style=flat-square
           :target: https://github.com/althonos/moclo/tree/master/moclo
        
        .. |Docs| image:: https://img.shields.io/readthedocs/moclo.svg?maxAge=3600&style=flat-square
           :target: https://moclo.readthedocs.io/
        
        
        Requirements
        ------------
        
        +---------------------+----------------------------+------------------------+--------------------------+---------------------------+
        | **biopython**       |  Sequence handling         | |PyPI biopython|       | |Source biopython|       | |License biopython|       |
        +---------------------+----------------------------+------------------------+--------------------------+---------------------------+
        | **cached-property** |  Lazy regex evaluation     | |PyPI cached-property| | |Source cached-property| | |License cached-property| |
        +---------------------+----------------------------+------------------------+--------------------------+---------------------------+
        | **six**             | Python 2/3 compatibility   | |PyPI six|             | |Source six|             | |License six|             |
        +---------------------+----------------------------+------------------------+--------------------------+---------------------------+
        
        .. |PyPI cached-property| image:: https://img.shields.io/pypi/v/cached-property.svg?style=flat-square&maxAge=600
           :target: https://pypi.python.org/pypi/cached-property
        
        .. |PyPI biopython| image:: https://img.shields.io/pypi/v/biopython.svg?style=flat-square&maxAge=600
           :target: https://pypi.org/project/biopython/
        
        .. |PyPI six| image:: https://img.shields.io/pypi/v/six.svg?style=flat-square&maxAge=600
           :target: https://pypi.org/project/six/
        
        .. |Source cached-property| image:: https://img.shields.io/badge/source-GitHub-303030.svg?style=flat-square&maxAge=600
           :target: https://github.com/pydanny/cached-property
        
        .. |Source biopython| image:: https://img.shields.io/badge/source-GitHub-303030.svg?style=flat-square&maxAge=600
           :target: https://github.com/biopython/biopython
        
        .. |Source six| image:: https://img.shields.io/badge/source-GitHub-303030.svg?style=flat-square&maxAge=600
           :target: https://github.com/benjaminp/six
        
        .. |License cached-property| image:: https://img.shields.io/pypi/l/cached-property.svg?style=flat-square&maxAge=600
           :target: https://choosealicense.com/licenses/bsd-3-clause/
        
        .. |License biopython| image:: https://img.shields.io/badge/license-BSD%2FBioPython-blue.svg?style=flat-square&maxAge=600
           :target: https://choosealicense.com/licenses/bsd-3-clause/
        
        .. |License six| image:: https://img.shields.io/pypi/l/six.svg?style=flat-square&maxAge=600
           :target: https://choosealicense.com/licenses/mit/
        
        
        Installation
        ------------
        
        This package is available as a *wheel*, and can be installed with ``pip``::
        
          $ pip install --user moclo
        
        To see more ways of installing, head over to the `Installation <https://moclo.readthedocs.io/en/latest/install.html>`__
        page of the online documentation.
        
        
        Kits
        ----
        
        By itself, ``moclo`` is not very useful. To be able to simulate MoClo assemblies
        you can install some of the following toolkits:
        
        - `moclo-ytk <https://pypi.org/project/moclo-ytk>`_: MoClo Yeast ToolKit,
          *John Dueber Lab*, and Pichia ToolKit, *Volker Sieber Lab*
        - `moclo-cidar <https://pypi.org/project/moclo-cidar>`_: MoClo CIDAR kit,
          *Douglas Densmore Lab*
        - `moclo-ecoflex <https://pypi.org/project/moclo-ecoflex>`_: MoClo EcoFlex,
          *Paul Freemont Lab*
        
        Toolkits ship with concrete implementation of the MoClo logic (using the DNA
        signatures and restriction enzymes from the reference paper), as well as official
        sequences obtained from `AddGene <https://www.addgene.org>`_ and manually
        annotated with higher-quality features. These sequences can be accessed through
        the ``moclo.registry`` module, using the *registry* interface.
        
        
        About
        -----
        
        This library is licensed under the `MIT License <http://choosealicense.com/licenses/mit/>`_.
        It was developed during a placement at the
        `InBio team <https://research.pasteur.fr/en/team/experimental-and-computational-methods-for-modeling-cellular-processes/>`_
        at the Institut Pasteur of Paris during the summer of 2018.
        
Keywords: bioinformatics,synthetic biology,modular cloning,moclo
Platform: any
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >= 2.7, != 3.0.*, != 3.1.*, != 3.2.*, != 3.3.*, != 3.5.1
